I've found the issue and the solution, for some reason the broken qci had two commands inserted into it:
I simply removed the commands and it began working again. Still not sure how the commands got in there though
Code Select
//File for injecting custom rules. Safe to edit. Do not delete.
$include "stonedblewindow_wwmt_custom.qci"
$include "stonedblewindow_wwmt_custom.qci"
I simply removed the commands and it began working again. Still not sure how the commands got in there though